Efficient Laplace NMR methods for biological nanoparticles, ionic liquids and porous materials research
Ullah, Md Sharif (2022-12-15)
https://urn.fi/URN:ISBN:9789526234755
Kuvaus
Tiivistelmä
Abstract
The thesis aims to characterize extracellular vesicles (EVs) utilizing nuclear magnetic resonance (NMR) and develop different ultrafast Laplace NMR (UF LNMR) methods. LNMR consists of diffusion and relaxation NMR experiments and provides detailed information about molecular rotational and translational motion. A multidimensional approach substantially enhances the resolution and information content of LNMR. However, multidimensional LNMR experiments are slow because of the need to repeat the experiment with incremented evolution time. The utilization of an ultrafast approach in multidimensional LNMR experiments significantly reduces the experiment time. In the UF LNMR approach, the evolution times are encoded in different layers of a sample. This way, the data of a multidimensional experiment can be read in a single scan, shortening the experiment time by one to three orders of magnitude. The single scan approach allows hyperpolarization techniques to boost the experimental sensitivity by several orders of magnitude.
In the first part of the thesis, we demonstrate that diffusion-ordered spectroscopy (DOSY) is an NMR tool to characterize various EV samples extracted from milk as well as embryonic kidney and renal carcinoma cells based on their size distributions. The DOSY NMR allows one to determine a broad size distribution ranging from 1 to 500 nm. Transmission electron microscopy (TEM) and nanoparticle tracking analysis (NTA) confirm the DOSY NMR size distribution. However, the NTA analysis cannot detect any particle below 70 nm. A complementary hyperpolarized chemical exchange saturation transfer (hyper-CEST) 129Xe NMR study confirms the presence of small and large nanoparticles in the EV samples.
In the second part of the thesis, we introduced a novel single scan UF LNMR called UF T2-T2 relaxation exchange spectroscopy (REXSY) method to quantify the molecular exchange using T2 relaxation as a contrast. We studied a halogen-free orthoborate-based ionic liquid (IL) to validate the method. It allowed us to quantify the molecular exchange that occurred between the aggregates and free ions. The results obtained from UF REXSY are in good agreement with conventional reference experiments. The UF REXSY method provides the means of analyzing molecular exchange processes in different fields, such as cellular metabolism and ion transport in electrolytes, with higher sensitivity and efficiency.
In the final part of the thesis, we demonstrated a modified UF T1-T2 correlation experiment suitable for nonlinear sampling of T1 data. The method leads to the optimal sampling of exponential data. The technique uses frequency-swept pulses whose frequency increases nonlinearly with time. As proof-of-principle, we exploited the method in analyzing single- and double-tube doped water systems and porous materials. The nonlinear sampling resulted in enhanced resolution. This approach can also be used in other multidimensional UF LNMR experiments, such as diffusion experiments.
Original papers
Original papers are not included in the electronic version of the dissertation.
Ullah, M. S., Zhivonitko, V. V., Samoylenko, A., Zhyvolozhnyi, A., Viitala, S., Kankaanpää, S., Komulainen, S., Schröder, L., Vainio, S. J., & Telkki, V.-V. (2021). Identification of extracellular nanoparticle subsets by nuclear magnetic resonance. Chemical Science, 12(24), 8311–8319. https://doi.org/10.1039/D1SC01402A
Ullah, M. S., Mankinen, O., Zhivonitko, V. V., & Telkki, V.-V. (2022). Ultrafast transverse relaxation exchange NMR spectroscopy. Physical Chemistry Chemical Physics, 24(36), 22109–22114. https://doi.org/10.1039/D2CP02944H
Zhivonitko, V. V., Ullah, M. S., & Telkki, V.-V. (2019). Nonlinear sampling in ultrafast Laplace NMR. Journal of Magnetic Resonance, 307, 106571. https://doi.org/10.1016/j.jmr.2019.106571
Osajulkaisut
Osajulkaisut eivät sisälly väitöskirjan elektroniseen versioon.
Ullah, M. S., Zhivonitko, V. V., Samoylenko, A., Zhyvolozhnyi, A., Viitala, S., Kankaanpää, S., Komulainen, S., Schröder, L., Vainio, S. J., & Telkki, V.-V. (2021). Identification of extracellular nanoparticle subsets by nuclear magnetic resonance. Chemical Science, 12(24), 8311–8319. https://doi.org/10.1039/D1SC01402A
Ullah, M. S., Mankinen, O., Zhivonitko, V. V., & Telkki, V.-V. (2022). Ultrafast transverse relaxation exchange NMR spectroscopy. Physical Chemistry Chemical Physics, 24(36), 22109–22114. https://doi.org/10.1039/D2CP02944H
Zhivonitko, V. V., Ullah, M. S., & Telkki, V.-V. (2019). Nonlinear sampling in ultrafast Laplace NMR. Journal of Magnetic Resonance, 307, 106571. https://doi.org/10.1016/j.jmr.2019.106571
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