Loss-of-function mutation in <em>IKZF2</em> leads to immunodeficiency with dysregulated germinal center reactions and reduction of MAIT cells

Abstract

<div lang="en" class="abs"><p class="abs_header">Abstract</p><p>The Ikaros family transcription factors regulate lymphocyte development. Loss-of-function variants in <em>IKZF1</em> cause primary immunodeficiency, but Ikaros family members <em>IKZF2</em> and <em>IKZF3</em> have not yet been associated with immunodeficiency. Here, we describe a pedigree with a heterozygous truncating variant in <em>IKZF2</em>, encoding the transcriptional activator and repressor Helios, which is highly expressed in regulatory T cells and effector T cells, particularly of the CD8⁺ T cell lineage. Protein-protein interaction analysis revealed that the variant abolished heterodimerization of Helios with Ikaros and Aiolos and also prevented Helios binding to members of the Mi-2/NuRD chromatin remodeling complex. Patients carrying the <em>IKZF2</em> variant presented with a combined immunodeficiency phenotype characterized by recurrent upper respiratory infections, thrush and mucosal ulcers, and chronic lymphadenopathy. With extensive immunophenotyping, functional assays, and transcriptional analysis, we show that reduced Helios expression was associated with chronic T cell activation and increased production of proinflammatory cytokines both in effector and regulatory T cells. Lymph node histology from patients indicated dysregulated germinal center reactions. Moreover, affected individuals displayed a profound reduction in circulating MAIT cell numbers. In summary, we show that this previously undescribed loss-of-function variant in Helios leads to an immunodeficiency with signs of immune overactivation.</p></div>