BioTIME : a database of biodiversity time series for the Anthropocene

Dornelas, Maria; Antao, Laura H.; Moyes, Faye; Bates, Amanda E.; Magurran, Anne E.; Adam, Dusan; Akhmetzhanova, Asem A.; Appeltans, Ward; Arcos, Jose Manuel; Arnold, Haley; Ayyappan, Narayanan; Badihi, Gal; Baird, Andrew H.; Barbosa, Miguel; Barreto, Tiago Egydio; Baessler, Claus; Bellgrove, Alecia; Belmaker, Jonathan; Benedetti-Cecchi, Lisandro; Bett, Brian J.; Bjorkman, Anne D.; Blazewicz, Magdalena; Blowes, Shane A.; Bloch, Christopher P.; Bonebrake, Timothy C.; Boyd, Susan; Bradford, Matt; Brooks, Andrew J.; Brown, James H.; Bruelheide, Helge; Budy, Phaedra; Carvalho, Fernando; Castaneda-Moya, Edward; Chen, Chaolun Allen; Chamblee, John F.; Chase, Tory J.; Siegwart Collier, Laura; Collinge, Sharon K.; Condit, Richard; Cooper, Elisabeth J.; Cornelissen, J. Hans C.; Cotano, Unai; Crow, Shannan Kyle; Damasceno, Gabriella; Davies, Claire H.; Davis, Robert A.; Day, Frank P.; Degraer, Steven; Doherty, Tim S.; Dunn, Timothy E.; Durigan, Giselda; Duffy, J. Emmett; Edelist, Dor; Edgar, Graham J.; Elahi, Robin; Elmendorf, Sarah C.; Enemar, Anders; Ernest, S. K. Morgan; Escribano, Ruben; Estiarte, Marc; Evans, Brian S.; Fan, Tung-Yung; Farah, Fabiano Turini; Fernandes, Luiz Loureiro; Farneda, Fabio Z.; Fidelis, Alessandra; Fitt, Robert; Fosaa, Anna Maria; Daher Correa Franco, Geraldo Antonio; Frank, Grace E.; Fraser, William R.; Garcia, Hernando; Gatti, Roberto Cazzolla; Givan, Or; Gorgone-Barbosa, Elizabeth; Gould, William A.; Gries, Corinna; Grossman, Gary D.; Gutierrez, Julio R.; Hale, Stephen; Harmon, Mark E.; Harte, John; Haskins, Gary; Henshaw, Donald L.; Hermanutz, Luise; Hidalgo, Pamela; Higuchi, Pedro; Hoey, Andrew; Van Hoey, Gert; Hofgaard, Annika; Holeck, Kristen; Hollister, Robert D.; Holmes, Richard; Hoogenboom, Mia; Hsieh, Chih-hao; Hubbell, Stephen P.; Huettmann, Falk; Huffard, Christine L.; Hurlbert, Allen H.; Ivanauskas, Natalia Macedo; Janik, David; Jandt, Ute; Jazdzewska, Anna; Johannessen, Tore; Johnstone, Jill; Jones, Julia; Jones, Faith A. M.; Kang, Jungwon; Kartawijaya, Tasrif; Keeley, Erin C.; Kelt, Douglas A.; Kinnear, Rebecca; Klanderud, Kari; Knutsen, Halvor; Koenig, Christopher C.; Kortz, Alessandra R.; Kral, Kamil; Kuhnz, Linda A.; Kuo, Chao-Yang; Kushner, David J.; Laguionie-Marchais, Claire; Lancaster, Lesley T.; Min Lee, Cheol; Lefcheck, Jonathan S.; Levesque, Esther; Lightfoot, David; Lloret, Francisco; Lloyd, John D.; Lopez-Baucells, Adria; Louzao, Maite; Madin, Joshua S.; Magnusson, Borgpor; Malamud, Shahar; Matthews, Iain; McFarland, Kent P.; McGill, Brian; McKnight, Diane; McLarney, William O.; Meador, Jason; Meserve, Peter L.; Metcalfe, Daniel J.; Meyer, Christoph F. J.; Michelsen, Anders; Milchakova, Nataliya; Moens, Tom; Moland, Even; Moore, Jon; Moreira, Carolina Mathias; Mueller, Joerg; Murphy, Grace; Myers-Smith, Isla H.; Myster, Randall W.; Naumov, Andrew; Neat, Francis; Nelson, James A.; Paul Nelson, Michael; Newton, Stephen F.; Norden, Natalia; Oliver, Jeffrey C.; Olsen, Esben M.; Onipchenko, Vladimir G.; Pabis, Krzysztof; Pabst, Robert J.; Paquette, Alain; Pardede, Sinta; Paterson, David M.; Pelissier, Raphael; Penuelas, Josep; Perez-Matus, Alejandro; Pizarro, Oscar; Pomati, Francesco; Post, Eric; Prins, Herbert H. T.; Priscu, John C.; Provoost, Pieter; Prudic, Kathleen L.; Erkki, Pulliainen; Ramesh, B. R.; Mendivil Ramos, Olivia; Rassweiler, Andrew; Rebelo, Jose Eduardo; Reed, Daniel C.; Reich, Peter B.; Remillard, Suzanne M.; Richardson, Anthony J.; Richardson, J. Paul; van Rijn, Itai; Rocha, Ricardo; Rivera-Monroy, Victor H.; Rixen, Christian; Robinson, Kevin P.; Rodrigues, Ricardo Ribeiro; Rossa-Feres, Denise de Cerqueira; Rudstam, Lars; Ruhl, Henry; Ruz, Catalina S.; Sampaio, Erica M.; Rybicki, Nancy; Rypel, Andrew; Sal, Sofia; Salgado, Beatriz; Santos, Flavio A. M.; Savassi-Coutinho, Ana Paula; Scanga, Sara; Schmidt, Jochen; Schooley, Robert; Setiawan, Fakhrizal; Shao, Kwang-Tsao; Shaver, Gaius R.; Sherman, Sally; Sherry, Thomas W.; Sicinski, Jacek; Sievers, Caya; da Silva, Ana Carolina; da Silva, Fernando Rodrigues; Silveira, Fabio L.; Slingsby, Jasper; Smart, Tracey; Snell, Sara J.; Soudzilovskaia, Nadejda A.; Souza, Gabriel B. G.; Souza, Flaviana Maluf; Souza, Vinicius Castro; Stallings, Christopher D.; Stanforth, Rowan; Stanley, Emily H.; Sterza, Jose Mauro; Stevens, Maarten; Stuart-Smith, Rick; Rondon Suarez, Yzel; Supp, Sarah; Yoshio Tamashiro, Jorge; Tarigan, Sukmaraharja; Thiede, Gary P.; Thorn, Simon; Tolvanen, Anne; Zugliani Toniato, Maria Teresa; Totland, Orjan; Twilley, Robert R.; Vaitkus, Gediminas; Valdivia, Nelson; Vallejo, Martha Isabel; Valone, Thomas J.; Van Colen, Carl; Vanaverbeke, Jan; Venturoli, Fabio; Verheye, Hans M.; Vianna, Marcelo; Vieira, Rui P.; Vrska, Tomas; Vu, Con Quang; Vu, Lien Van; Waide, Robert B.; Waldock, Conor; Watts, Dave; Webb, Sara; Wesolowski, Tomasz; White, Ethan P.; Widdicombe, Claire E.; Wilgers, Dustin; Williams, Richard; Williams, Stefan B.; Williamson, Mark; Willig, Michael R.; Willis, Trevor J.; Wipf, Sonja; Woods, Kerry D.; Woehler, Eric J.; Zawada, Kyle; Zettler, Michael L. (2018-07-24)
 
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URL:
https://doi.org/10.1111/geb.12729

Dornelas, Maria
Antao, Laura H.
Moyes, Faye
Bates, Amanda E.
Magurran, Anne E.
Adam, Dusan
Akhmetzhanova, Asem A.
Appeltans, Ward
Arcos, Jose Manuel
Arnold, Haley
Ayyappan, Narayanan
Badihi, Gal
Baird, Andrew H.
Barbosa, Miguel
Barreto, Tiago Egydio
Baessler, Claus
Bellgrove, Alecia
Belmaker, Jonathan
Benedetti-Cecchi, Lisandro
Bett, Brian J.
Bjorkman, Anne D.
Blazewicz, Magdalena
Blowes, Shane A.
Bloch, Christopher P.
Bonebrake, Timothy C.
Boyd, Susan
Bradford, Matt
Brooks, Andrew J.
Brown, James H.
Bruelheide, Helge
Budy, Phaedra
Carvalho, Fernando
Castaneda-Moya, Edward
Chen, Chaolun Allen
Chamblee, John F.
Chase, Tory J.
Siegwart Collier, Laura
Collinge, Sharon K.
Condit, Richard
Cooper, Elisabeth J.
Cornelissen, J. Hans C.
Cotano, Unai
Crow, Shannan Kyle
Damasceno, Gabriella
Davies, Claire H.
Davis, Robert A.
Day, Frank P.
Degraer, Steven
Doherty, Tim S.
Dunn, Timothy E.
Durigan, Giselda
Duffy, J. Emmett
Edelist, Dor
Edgar, Graham J.
Elahi, Robin
Elmendorf, Sarah C.
Enemar, Anders
Ernest, S. K. Morgan
Escribano, Ruben
Estiarte, Marc
Evans, Brian S.
Fan, Tung-Yung
Farah, Fabiano Turini
Fernandes, Luiz Loureiro
Farneda, Fabio Z.
Fidelis, Alessandra
Fitt, Robert
Fosaa, Anna Maria
Daher Correa Franco, Geraldo Antonio
Frank, Grace E.
Fraser, William R.
Garcia, Hernando
Gatti, Roberto Cazzolla
Givan, Or
Gorgone-Barbosa, Elizabeth
Gould, William A.
Gries, Corinna
Grossman, Gary D.
Gutierrez, Julio R.
Hale, Stephen
Harmon, Mark E.
Harte, John
Haskins, Gary
Henshaw, Donald L.
Hermanutz, Luise
Hidalgo, Pamela
Higuchi, Pedro
Hoey, Andrew
Van Hoey, Gert
Hofgaard, Annika
Holeck, Kristen
Hollister, Robert D.
Holmes, Richard
Hoogenboom, Mia
Hsieh, Chih-hao
Hubbell, Stephen P.
Huettmann, Falk
Huffard, Christine L.
Hurlbert, Allen H.
Ivanauskas, Natalia Macedo
Janik, David
Jandt, Ute
Jazdzewska, Anna
Johannessen, Tore
Johnstone, Jill
Jones, Julia
Jones, Faith A. M.
Kang, Jungwon
Kartawijaya, Tasrif
Keeley, Erin C.
Kelt, Douglas A.
Kinnear, Rebecca
Klanderud, Kari
Knutsen, Halvor
Koenig, Christopher C.
Kortz, Alessandra R.
Kral, Kamil
Kuhnz, Linda A.
Kuo, Chao-Yang
Kushner, David J.
Laguionie-Marchais, Claire
Lancaster, Lesley T.
Min Lee, Cheol
Lefcheck, Jonathan S.
Levesque, Esther
Lightfoot, David
Lloret, Francisco
Lloyd, John D.
Lopez-Baucells, Adria
Louzao, Maite
Madin, Joshua S.
Magnusson, Borgpor
Malamud, Shahar
Matthews, Iain
McFarland, Kent P.
McGill, Brian
McKnight, Diane
McLarney, William O.
Meador, Jason
Meserve, Peter L.
Metcalfe, Daniel J.
Meyer, Christoph F. J.
Michelsen, Anders
Milchakova, Nataliya
Moens, Tom
Moland, Even
Moore, Jon
Moreira, Carolina Mathias
Mueller, Joerg
Murphy, Grace
Myers-Smith, Isla H.
Myster, Randall W.
Naumov, Andrew
Neat, Francis
Nelson, James A.
Paul Nelson, Michael
Newton, Stephen F.
Norden, Natalia
Oliver, Jeffrey C.
Olsen, Esben M.
Onipchenko, Vladimir G.
Pabis, Krzysztof
Pabst, Robert J.
Paquette, Alain
Pardede, Sinta
Paterson, David M.
Pelissier, Raphael
Penuelas, Josep
Perez-Matus, Alejandro
Pizarro, Oscar
Pomati, Francesco
Post, Eric
Prins, Herbert H. T.
Priscu, John C.
Provoost, Pieter
Prudic, Kathleen L.
Erkki, Pulliainen
Ramesh, B. R.
Mendivil Ramos, Olivia
Rassweiler, Andrew
Rebelo, Jose Eduardo
Reed, Daniel C.
Reich, Peter B.
Remillard, Suzanne M.
Richardson, Anthony J.
Richardson, J. Paul
van Rijn, Itai
Rocha, Ricardo
Rivera-Monroy, Victor H.
Rixen, Christian
Robinson, Kevin P.
Rodrigues, Ricardo Ribeiro
Rossa-Feres, Denise de Cerqueira
Rudstam, Lars
Ruhl, Henry
Ruz, Catalina S.
Sampaio, Erica M.
Rybicki, Nancy
Rypel, Andrew
Sal, Sofia
Salgado, Beatriz
Santos, Flavio A. M.
Savassi-Coutinho, Ana Paula
Scanga, Sara
Schmidt, Jochen
Schooley, Robert
Setiawan, Fakhrizal
Shao, Kwang-Tsao
Shaver, Gaius R.
Sherman, Sally
Sherry, Thomas W.
Sicinski, Jacek
Sievers, Caya
da Silva, Ana Carolina
da Silva, Fernando Rodrigues
Silveira, Fabio L.
Slingsby, Jasper
Smart, Tracey
Snell, Sara J.
Soudzilovskaia, Nadejda A.
Souza, Gabriel B. G.
Souza, Flaviana Maluf
Souza, Vinicius Castro
Stallings, Christopher D.
Stanforth, Rowan
Stanley, Emily H.
Sterza, Jose Mauro
Stevens, Maarten
Stuart-Smith, Rick
Rondon Suarez, Yzel
Supp, Sarah
Yoshio Tamashiro, Jorge
Tarigan, Sukmaraharja
Thiede, Gary P.
Thorn, Simon
Tolvanen, Anne
Zugliani Toniato, Maria Teresa
Totland, Orjan
Twilley, Robert R.
Vaitkus, Gediminas
Valdivia, Nelson
Vallejo, Martha Isabel
Valone, Thomas J.
Van Colen, Carl
Vanaverbeke, Jan
Venturoli, Fabio
Verheye, Hans M.
Vianna, Marcelo
Vieira, Rui P.
Vrska, Tomas
Vu, Con Quang
Vu, Lien Van
Waide, Robert B.
Waldock, Conor
Watts, Dave
Webb, Sara
Wesolowski, Tomasz
White, Ethan P.
Widdicombe, Claire E.
Wilgers, Dustin
Williams, Richard
Williams, Stefan B.
Williamson, Mark
Willig, Michael R.
Willis, Trevor J.
Wipf, Sonja
Woods, Kerry D.
Woehler, Eric J.
Zawada, Kyle
Zettler, Michael L.
John Wiley & Sons
24.07.2018

Dornelas M, Antão LH, Moyes F, et al. BioTIME: A database of biodiversity time series for the Anthropocene. Global Ecol Biogeogr. 2018;27:760–786. https://doi.org/10.1111/geb.12729

https://creativecommons.org/licenses/by/4.0/
© 2018 The Authors. Global Ecology and Biogeography Published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
https://creativecommons.org/licenses/by/4.0/
doi:https://doi.org/10.1111/geb.12729
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https://urn.fi/URN:NBN:fi-fe2018092036131
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Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.

Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.

Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km² (158 cm²) to 100 km² (1,000,000,000,000 cm²).

Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.

Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.

Software format: .csv and .SQL.

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https://creativecommons.org/licenses/by/4.0/
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